JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREBBP_chr16_3720054_3885713	0/0	t0023	3449	2	0	2	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0024	3450	2	2	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0025	3451	2	0	0	1	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0026	3451	2	0	0	2	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0027	3452	2	0	0	1	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0028	3449	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0029	3417	1	0	0	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0030	3449	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0031	3449	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0032	3449	1	0	0	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0033	3449	1	0	0	0	1	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	1/0	t0034	3462	1	0	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0035	3450	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0036	3449	1	0	1	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0037	3450	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0038	3450	1	0	0	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0039	3449	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/1	t0040	3449	1	0	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0041	3449	1	0	0	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0042	3449	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0043	3449	1	0	0	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0044	3449	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0045	3450	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0046	3450	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0047	3450	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0048	3462	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0049	3450	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0050	3451	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0051	3450	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0052	3450	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0053	3449	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBL2_chr12_12606876_12650108	0/1	t0001	3403	125	25	21	55	5	18	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0002	3408	104	18	19	55	4	8	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	1/0	t0003	3408	40	18	3	9	3	6	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0004	3408	31	5	13	13	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0005	3403	15	0	4	7	0	4	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0006	3403	9	0	0	9	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0007	3408	6	6	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0008	3403	4	4	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0009	3413	4	0	2	0	0	2	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0010	3408	3	2	1	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0011	3408	3	0	0	3	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0012	3403	3	3	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0013	3403	3	0	2	0	0	1	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0014	3408	2	0	2	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0015	3408	2	2	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0016	3403	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0017	3403	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0018	3443	1	0	0	1	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0019	3408	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108