JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREBL2_chr12_12606876_12650108	0/0	t0020	3408	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0021	3403	1	0	1	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0022	3403	1	0	0	1	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0023	3408	1	0	0	0	0	1	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0024	3408	1	0	0	0	1	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0025	3408	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0026	3408	1	0	0	1	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0027	3408	1	0	1	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0028	3408	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0029	3408	1	0	0	0	1	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0030	3408	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0031	3403	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0032	3403	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	t0033	3408	1	0	1	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBRF_chr5_173051352_173144284	1/1	t0001	5859	99	19	18	45	4	11	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0002	5858	60	18	13	20	5	4	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0003	5857	38	13	5	11	0	9	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0004	5859	20	2	11	2	2	3	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0005	5857	12	6	3	1	0	2	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0006	5859	10	3	3	2	0	2	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0007	5853	9	8	1	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0008	5859	6	5	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0009	5859	4	0	3	0	1	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0010	5860	4	0	4	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0011	5857	3	2	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0012	5854	3	0	0	3	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0013	5860	3	1	0	1	0	1	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0014	5857	2	1	1	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0015	5855	2	1	1	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0016	5861	2	0	0	2	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0017	5863	2	2	0	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0018	5859	1	1	0	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0019	5855	1	0	1	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0020	5859	1	0	1	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0021	5859	1	0	0	0	0	1	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0022	5858	1	1	0	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0023	5858	1	0	0	0	1	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0024	5858	1	0	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0025	5874	1	0	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0026	5840	1	0	0	0	1	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0027	5861	1	1	0	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0028	5861	1	0	0	0	0	1	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0029	5863	1	0	1	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	t0030	5852	1	0	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBZF_chr11_85652990_85670129	1/1	t0001	6076	155	36	35	56	14	12	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0002	6075	80	12	13	46	0	9	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0003	6076	46	3	4	35	1	3	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0004	6073	10	9	1	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0005	6076	10	0	5	3	1	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0006	6076	6	0	0	6	0	0	copy fasta	CREBZF	chr11	85652990	85670129