JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREBZF_chr11_85652990_85670129	0/0	t0007	6075	6	2	0	3	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0008	6076	6	5	1	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0009	6078	6	0	0	6	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0010	6075	5	3	2	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0011	6073	4	4	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0012	6076	4	0	1	0	0	3	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0013	6075	3	0	2	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0014	6076	3	0	2	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0015	6076	3	0	2	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0016	6077	3	0	0	3	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0017	6073	2	2	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0018	6078	2	2	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0019	6073	2	2	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0020	6076	2	0	0	0	0	2	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0021	6076	2	2	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0022	6077	2	0	0	2	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0023	6076	2	0	1	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0024	6077	2	0	1	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0025	6073	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0026	6078	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0027	6075	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0028	6076	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0029	6075	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0030	6075	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0031	6077	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0032	6078	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0033	6078	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0034	6075	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0035	6078	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0036	6076	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0037	6076	1	0	1	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0038	6076	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0039	6075	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0040	6076	1	0	0	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0041	6076	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0042	6076	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0043	6076	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0044	6076	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0045	6078	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0046	6078	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0047	6076	1	0	1	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0048	6077	1	0	0	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0049	6077	1	0	0	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	t0050	6076	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREG1_chr1_167536013_167558762	0/1	t0001	1307	298	76	51	115	15	40	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0002	1307	67	4	9	50	1	3	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0003	1307	20	1	15	1	0	3	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0004	1307	14	12	2	0	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	1/0	t0005	1307	5	0	3	0	1	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0006	1302	3	0	0	3	0	0	copy fasta	CREG1	chr1	167536013	167558762