JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREG1_chr1_167536013_167558762	0/0	t0007	1307	3	0	0	3	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0008	1307	2	2	0	0	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0009	1307	1	0	0	0	0	1	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0010	1307	1	0	0	1	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0011	1307	1	1	0	0	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0012	1307	1	0	0	0	1	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0013	1307	1	0	0	1	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	t0014	1307	1	0	0	0	0	1	copy fasta	CREG1	chr1	167536013	167558762
CREG2_chr2_101340550_101392503	0/0	t0001	5417	114	15	30	57	4	8	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0002	5418	72	12	10	48	0	2	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0003	5418	48	5	5	25	7	6	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0004	5418	18	3	3	5	0	7	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	1/1	t0005	5420	13	5	4	0	0	2	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0006	5420	7	7	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0007	5418	6	5	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0008	5418	6	1	0	4	0	1	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0009	5419	6	5	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0010	5417	5	0	0	5	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0011	5420	5	5	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0012	5417	4	0	0	4	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0013	5423	4	4	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0014	5417	4	4	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0015	5418	4	0	0	0	0	4	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0016	5418	4	0	4	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0017	5420	4	3	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0018	5418	3	3	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0019	5418	3	0	2	0	0	1	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0020	5418	3	3	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0021	5420	3	3	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0022	5418	3	0	0	0	0	3	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0023	5417	2	1	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0024	5417	2	0	0	2	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0025	5417	2	0	0	1	0	1	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0026	5421	2	2	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0027	5420	2	2	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0028	5420	2	0	2	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0029	5419	2	2	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0030	5418	2	0	2	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0031	5420	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0032	5417	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0033	5417	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0034	5417	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0035	5416	1	0	0	0	0	1	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0036	5417	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0037	5417	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0038	5417	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0039	5417	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0040	5417	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0041	5418	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0042	5418	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503