JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREG2_chr2_101340550_101392503	0/0	t0043	5417	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0044	5418	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0045	5421	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0046	5420	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0047	5418	1	0	0	0	1	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0048	5418	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0049	5418	1	0	0	0	0	1	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0050	5418	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0051	5418	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0052	5418	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0053	5420	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0054	5408	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0055	5419	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0056	5417	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0057	5419	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0058	5418	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0059	5418	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0060	5418	1	0	0	1	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0061	5419	1	0	0	0	0	1	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0062	5420	1	0	1	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	t0063	5420	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CRELD1_chr3_9928834_9950406	1/1	t0001	934	373	74	70	168	14	45	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	t0002	934	16	13	2	0	0	1	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	t0003	934	9	9	0	0	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	t0004	934	3	0	0	3	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	t0005	934	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD2_chr22_49913634_49932537	1/1	t0001	367	221	42	51	93	10	23	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0002	367	81	31	10	26	4	10	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0003	367	6	1	1	2	0	2	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0004	368	5	4	1	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0005	367	5	5	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0006	367	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0007	367	1	0	1	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0008	367	1	0	0	0	0	1	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0009	367	1	0	0	0	0	1	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0010	368	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	t0011	367	1	0	0	0	0	1	copy fasta	CRELD2	chr22	49913634	49932537
CREM_chr10_35121846_35217953	1/0	t0001	1958	154	53	23	48	8	21	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0002	1957	74	7	15	40	5	7	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0003	1958	32	2	9	8	1	12	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0004	1959	11	9	2	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0005	1958	4	4	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0006	1958	3	0	2	1	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0007	1957	2	2	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0008	1958	2	0	0	0	0	2	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0009	1958	1	1	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/1	t0010	1958	1	0	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0011	1958	1	0	0	1	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0012	1958	1	0	1	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0013	1958	1	0	1	0	0	0	copy fasta	CREM	chr10	35121846	35217953