JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREM_chr10_35121846_35217953	0/0	t0014	1958	1	0	0	1	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0015	1958	1	1	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0016	1957	1	0	0	1	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0017	1958	1	0	0	1	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0018	1958	1	1	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0019	1958	1	0	0	1	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	t0020	1958	1	0	1	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CRHBP_chr5_76948045_76974471	0/1	t0001	677	173	37	22	84	5	24	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	1/0	t0002	677	155	16	44	68	8	18	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0003	677	31	27	3	0	1	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0004	677	23	0	2	21	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0005	677	16	0	4	12	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0006	675	8	8	0	0	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0007	677	4	3	1	0	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0008	673	4	2	2	0	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0009	677	1	0	0	1	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	t0010	677	1	1	0	0	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHR1_chr17_45779320_45840828	0/0	t0001	1290	172	63	43	43	7	16	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0002	1290	35	1	6	23	1	4	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0003	1290	22	1	4	15	0	2	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0004	1291	21	2	8	1	4	6	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0005	1290	20	12	4	2	1	1	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/1	t0006	1290	10	0	4	5	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0007	1290	9	6	0	1	1	1	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0008	1290	3	0	1	2	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0009	1290	2	2	0	0	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0010	1290	2	2	0	0	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0011	1290	2	1	0	1	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0012	1291	1	1	0	0	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0013	1290	1	1	0	0	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	t0014	1290	1	0	0	1	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR2_chr7_30646942_30687456	1/1	t0001	1695	330	66	68	142	14	38	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0002	1695	30	0	5	23	0	2	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0003	1695	15	14	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0004	1695	6	6	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0005	1695	5	3	2	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0006	1695	3	0	0	3	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0007	1695	2	2	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0008	1695	2	0	0	0	0	2	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0009	1695	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0010	1695	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0011	1695	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0012	1695	1	0	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0013	1695	1	0	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0014	1695	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	t0015	1695	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRH_chr8_66171376_66183464	1/1	t0001	698	368	88	65	161	14	38	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	t0002	698	2	2	0	0	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	t0003	698	2	2	0	0	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	t0004	698	1	0	1	0	0	0	copy fasta	CRH	chr8	66171376	66183464