JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRH_chr8_66171376_66183464	0/0	t0005	698	1	0	0	1	0	0	copy fasta	CRH	chr8	66171376	66183464
CRIM1_chr2_36350778_36556135	0/0	t0001	2950	31	4	12	8	3	4	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0002	2948	30	3	2	24	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	1/1	t0003	2950	22	4	9	2	2	3	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0004	2948	17	5	6	5	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0005	2953	14	3	3	8	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0006	2949	12	3	4	0	1	4	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0007	2947	11	1	3	0	2	5	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0008	2951	11	1	2	8	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0009	2948	7	0	0	7	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0010	2951	7	1	0	6	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0011	2949	6	5	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0012	2948	6	0	0	6	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0013	2951	6	0	0	6	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0014	2953	6	2	0	2	1	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0015	2951	5	0	0	5	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0016	2952	5	0	2	0	1	2	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0017	2949	4	0	3	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0018	2952	4	2	1	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0019	2951	4	0	0	4	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0020	2947	3	2	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0021	2947	3	3	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0022	2950	3	0	0	1	0	2	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0023	2946	3	3	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0024	2951	3	0	0	3	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0025	2951	3	0	0	3	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0026	2951	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0027	2951	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0028	2950	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0029	2952	2	1	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0030	2949	2	0	0	2	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0031	2950	2	0	0	2	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0032	2950	2	0	0	0	0	2	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0033	2938	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0034	2946	2	1	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0035	2951	2	1	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0036	2953	2	0	0	0	0	2	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0037	2950	2	0	2	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0038	2950	2	1	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0039	2952	2	1	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0040	2955	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0041	2956	2	0	0	0	0	2	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0042	2944	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0043	2950	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0044	2948	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0045	2948	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0046	2943	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0047	2945	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0048	2949	1	0	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0049	2951	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135