JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRIM1_chr2_36350778_36556135	0/0	t0050	2948	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0051	2949	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0052	2948	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0053	2960	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0054	2949	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0055	2948	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0056	2949	1	0	0	0	1	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0057	2947	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0058	2949	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0059	2949	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0060	2939	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0061	2951	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0062	2955	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0063	2950	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0064	2947	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0065	2952	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0066	2943	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0067	2958	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0068	2949	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0069	2949	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0070	2948	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0071	2941	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0072	2952	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0073	2950	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0074	2954	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0075	2939	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0076	2953	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0077	2954	1	0	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0078	2965	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0079	2952	1	0	0	0	1	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0080	2949	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0081	2967	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0082	2952	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0083	2952	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0084	2950	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0085	2951	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0086	2952	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0087	2953	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0088	2955	1	0	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0089	2957	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0090	2953	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0091	2951	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0092	2953	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0093	2945	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0094	2949	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0095	2952	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0096	2973	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0097	2953	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0098	2954	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0099	2953	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135