JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRIM1_chr2_36350778_36556135	0/0	t0100	2946	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0101	2945	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0102	2946	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0103	2949	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0104	2950	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0105	2950	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	t0106	2948	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIP1_chr14_105481886_105493947	0/1	t0001	439	332	42	67	162	16	44	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	1/0	t0002	439	49	44	4	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	t0003	439	1	0	1	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	t0004	439	1	1	0	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	t0005	439	1	1	0	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947
CRIP2_chr14_105469821_105485162	1/1	t0001	552	289	63	58	117	10	39	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0002	552	14	13	1	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0003	552	3	2	1	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0004	552	3	0	0	3	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0005	590	1	0	1	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0006	552	1	0	0	1	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0007	552	1	1	0	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0008	552	1	0	1	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0009	552	1	0	0	1	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0010	552	1	1	0	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	t0011	552	1	0	0	0	0	1	copy fasta	CRIP2	chr14	105469821	105485162
CRIP3_chr6_43300472_43313826	1/1	t0001	377	373	92	71	156	12	40	copy fasta	CRIP3	chr6	43300472	43313826
CRIP3_chr6_43300472_43313826	0/0	t0002	377	3	2	1	0	0	0	copy fasta	CRIP3	chr6	43300472	43313826
CRIPT_chr2_46612215_46635176	0/0	t0001	6018	61	1	11	47	0	2	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	1/1	t0002	6018	45	4	14	14	4	7	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0003	6017	37	20	3	9	1	4	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0004	6017	33	0	18	6	4	5	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0005	6019	17	0	0	17	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0006	6019	16	0	0	13	0	3	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0007	6019	10	0	2	7	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0008	6016	10	1	0	9	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0009	6018	8	0	4	0	0	4	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0010	6019	8	0	0	8	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0011	6017	7	3	1	2	1	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0012	6016	7	7	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0013	6019	6	0	1	4	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0014	6019	6	6	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0015	6016	6	2	1	2	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0016	6014	6	0	0	6	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0017	6020	5	0	0	5	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0018	6017	4	0	0	4	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0019	6018	4	2	2	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0020	6018	4	0	0	3	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0021	6017	4	4	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0022	6018	4	2	0	1	1	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0023	6017	3	0	0	3	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0024	6017	3	1	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0025	6017	3	0	1	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176