JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRIPT_chr2_46612215_46635176	0/0	t0026	6018	3	0	0	3	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0027	6016	3	0	2	0	1	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0028	6017	3	3	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0029	6019	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0030	6018	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0031	6018	2	0	2	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0032	6018	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0033	6017	2	0	1	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0034	6018	2	0	0	0	2	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0035	6018	2	1	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0036	6017	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0037	6018	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0038	6020	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0039	6020	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0040	6016	2	0	1	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0041	6017	2	0	0	1	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0042	6018	2	0	1	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0043	6016	2	2	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0044	6016	2	0	0	2	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0045	6018	2	0	1	0	1	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0046	6019	2	2	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0047	6019	2	2	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0048	6014	2	0	0	0	0	2	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0049	6019	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0050	6018	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0051	6018	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0052	6018	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0053	6017	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0054	6018	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0055	6018	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0056	6018	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0057	6019	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0058	6018	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0059	6018	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0060	6017	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0061	6019	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0062	6020	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0063	6019	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0064	6018	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0065	6019	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0066	6017	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0067	6019	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0068	6018	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0069	6019	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0070	6019	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0071	6020	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0072	6020	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0073	6019	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0074	6021	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0075	6018	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176