JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRIPT_chr2_46612215_46635176	0/0	t0076	6019	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0077	6020	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0078	6022	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0079	6018	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0080	6019	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0081	6019	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0082	6020	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0083	6020	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0084	6017	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0085	6017	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0086	6017	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0087	6018	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0088	6017	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0089	6017	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0090	6019	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0091	6017	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0092	6018	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0093	6020	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0094	6019	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0095	6019	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0096	6016	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0097	6017	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0098	6017	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0099	6016	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0100	6019	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0101	6019	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0102	6019	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0103	6019	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0104	6018	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0105	6020	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0106	6020	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0107	6015	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0108	6016	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0109	6015	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0110	6016	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0111	6016	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0112	6016	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0113	6017	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0114	6017	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0115	6018	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0116	6018	1	0	1	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0117	6018	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0118	6018	1	0	0	0	1	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0119	6020	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0120	6015	1	0	0	1	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0121	6017	1	1	0	0	0	0	copy fasta	CRIPT	chr2	46612215	46635176
CRIPT_chr2_46612215_46635176	0/0	t0122	6017	1	0	0	0	0	1	copy fasta	CRIPT	chr2	46612215	46635176
CRISP1_chr6_49829257_49871535	0/1	t0001	1169	274	50	53	136	8	26	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0002	1169	51	28	5	7	2	9	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0003	1170	31	2	12	7	5	5	copy fasta	CRISP1	chr6	49829257	49871535