JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRISP1_chr6_49829257_49871535	0/0	t0004	1169	6	0	2	0	3	1	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0005	1169	4	0	0	4	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	1/0	t0006	1169	4	3	0	0	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0007	1169	4	4	0	0	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0008	1169	1	0	0	1	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0009	1169	1	0	0	0	0	1	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0010	1169	1	1	0	0	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	t0011	1169	1	0	0	1	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP2_chr6_49687359_49718543	0/1	t0001	634	278	48	52	144	7	26	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	1/0	t0002	634	109	31	19	29	11	18	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0003	634	13	12	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0004	634	2	0	2	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0005	634	1	0	0	1	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0006	634	1	0	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0007	634	1	0	0	1	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0008	634	1	0	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0009	634	1	1	0	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0010	634	1	0	0	1	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0011	634	1	1	0	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	t0012	634	1	1	0	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP3_chr6_49722376_49749388	0/1	t0001	1376	285	41	65	137	16	25	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0002	1376	55	17	3	27	0	8	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	1/0	t0003	1376	26	4	3	5	2	11	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0004	1376	11	10	1	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0005	1376	4	4	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0006	1376	3	3	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0007	1376	3	3	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0008	1376	2	1	1	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0009	1376	2	2	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0010	1376	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0011	1376	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0012	1376	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0013	1376	1	0	1	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0014	1376	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0015	1376	1	0	0	1	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0016	1376	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0017	1376	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	t0018	1376	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISPLD1_chr8_74979505_75039558	1/1	t0001	2795	111	7	23	54	6	19	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0002	2795	82	15	18	39	1	9	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0003	2795	42	12	5	18	4	3	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0004	2795	27	12	2	9	2	2	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0005	2792	18	6	3	7	0	2	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0006	2791	14	1	0	13	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0007	2795	10	9	1	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0008	2792	8	0	3	3	1	1	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0009	2795	7	0	2	0	1	4	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0010	2787	4	4	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0011	2794	4	4	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0012	2792	3	3	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558