JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRISPLD1_chr8_74979505_75039558	0/0	t0013	2795	3	0	1	0	2	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0014	2795	2	0	0	2	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0015	2791	2	0	1	0	1	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0016	2795	2	1	1	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0017	2795	2	0	0	2	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0018	2795	2	0	2	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0019	2795	2	1	1	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0020	2795	2	0	0	2	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0021	2795	2	2	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0022	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0023	2792	1	0	0	0	0	1	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0024	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0025	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0026	2795	1	0	0	0	0	1	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0027	2792	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0028	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0029	2792	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0030	2791	1	0	1	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0031	2792	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0032	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0033	2792	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0034	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0035	2795	1	0	0	1	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0036	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0037	2792	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0038	2795	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0039	2795	1	0	0	1	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	t0040	2795	1	0	0	1	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD2_chr16_84814985_84914508	0/0	t0001	3084	34	8	10	11	2	3	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0002	3088	31	16	6	9	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0003	3089	25	3	8	6	1	7	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0004	3090	21	1	3	12	2	3	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0005	3090	20	0	3	14	1	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0006	3088	19	5	1	12	1	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0007	3083	18	0	1	17	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0008	3083	17	0	2	14	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0009	3089	17	0	2	8	1	6	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0010	3084	12	4	5	1	0	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0011	3084	10	2	4	4	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0012	3084	9	3	2	2	0	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0013	3084	8	4	1	2	1	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0014	3089	7	2	0	0	1	4	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0015	3085	5	3	2	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0016	3090	5	3	1	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0017	3088	5	0	4	0	1	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0018	3083	5	0	0	5	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0019	3084	5	0	3	0	0	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	1/0	t0020	3090	4	0	2	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0021	3090	3	0	0	0	2	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0022	3083	3	0	2	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508