JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRISPLD2_chr16_84814985_84914508	0/0	t0023	3088	3	0	0	0	0	3	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0024	3090	3	3	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0025	3083	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0026	3088	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0027	3084	2	0	0	2	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0028	3090	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0029	3084	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/1	t0030	3088	2	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0031	3089	2	0	0	2	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0032	3090	2	0	0	1	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0033	3088	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0034	3088	2	0	1	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0035	3089	2	0	1	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0036	3088	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0037	3083	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0038	3084	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0039	3084	2	0	0	2	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0040	3089	2	0	0	2	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0041	3088	2	0	0	2	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0042	3089	2	0	0	2	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0043	3088	2	1	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0044	3089	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0045	3090	2	0	0	0	0	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0046	3088	2	0	0	1	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0047	3088	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0048	3084	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0049	3083	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0050	3089	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0051	3084	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0052	3090	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0053	3089	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0054	3084	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0055	3084	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0056	3090	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0057	3090	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0058	3090	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0059	3084	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0060	3089	1	0	0	0	1	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0061	3090	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0062	3089	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0063	3090	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0064	3090	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0065	3090	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0066	3088	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0067	3090	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0068	3090	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0069	3083	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0070	3088	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0071	3084	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0072	3084	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508