JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRISPLD2_chr16_84814985_84914508	0/0	t0073	3084	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0074	3085	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0075	3085	1	0	0	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0076	3088	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0077	3090	1	0	0	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0078	3090	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0079	3088	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0080	3089	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0081	3090	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0082	3090	1	0	0	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0083	3088	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0084	3090	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0085	3090	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0086	3084	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0087	3084	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0088	3084	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0089	3089	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0090	3088	1	0	0	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0091	3089	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0092	3088	1	0	0	0	0	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	t0093	3084	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRKL_chr22_20912407_20958747	0/1	t0001	4429	175	21	35	90	7	21	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	1/0	t0002	4431	69	26	12	18	7	5	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0003	4435	21	1	2	10	2	6	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0004	4423	15	15	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0005	4428	13	0	3	10	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0006	4429	9	0	0	9	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0007	4435	9	2	0	5	0	2	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0008	4428	5	1	3	0	0	1	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0009	4423	5	5	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0010	4266	4	2	2	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0011	4431	4	0	0	4	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0012	4435	4	0	0	4	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0013	4429	4	4	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0014	4438	2	2	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0015	4420	2	0	2	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0016	4429	2	0	0	2	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0017	4429	2	0	2	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0018	4429	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0019	4412	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0020	4431	1	0	1	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0021	4431	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0022	4437	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0023	4428	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0024	4429	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0025	4429	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0026	4435	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0027	4429	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0028	4432	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0029	4429	1	0	1	0	0	0	copy fasta	CRKL	chr22	20912407	20958747