JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRKL_chr22_20912407_20958747	0/0	t0030	4423	1	0	1	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0031	4429	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0032	4435	1	0	0	0	0	1	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0033	4429	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0034	4435	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0035	4432	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0036	4429	1	0	0	0	0	1	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0037	4429	1	0	0	1	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0038	4429	1	0	0	0	0	1	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0039	4435	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0040	4435	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0041	4429	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	t0042	4429	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRK_chr17_1415693_1461232	1/1	t0001	2936	112	6	26	62	6	10	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0002	2930	104	18	34	31	6	15	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0003	2936	58	17	10	26	2	3	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0004	2931	24	0	0	24	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0005	2936	14	1	1	11	0	1	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0006	2936	11	11	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0007	2936	9	9	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0008	2930	9	2	2	0	1	4	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0009	2935	8	8	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0010	2936	8	0	1	0	0	7	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0011	2935	4	4	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0012	2936	4	4	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0013	2930	3	0	0	3	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0014	2930	3	3	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0015	2936	3	1	1	0	1	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0016	2936	3	3	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0017	2930	2	0	1	0	0	1	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0018	2930	2	2	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0019	2930	1	0	1	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0020	2936	1	0	0	0	0	1	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0021	2936	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0022	2936	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0023	2936	1	1	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0024	2936	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0025	2936	1	0	1	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0026	2935	1	1	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0027	2930	1	0	1	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0028	2936	1	1	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0029	2936	1	1	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0030	2936	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0031	2936	1	0	1	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0032	2936	1	1	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0033	2936	1	1	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0034	2930	1	0	1	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0035	2936	1	1	0	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0036	2936	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0037	2936	1	0	1	0	0	0	copy fasta	CRK	chr17	1415693	1461232