JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRK_chr17_1415693_1461232	0/0	t0038	2936	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0039	2931	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0040	2930	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	t0041	2930	1	0	0	1	0	0	copy fasta	CRK	chr17	1415693	1461232
CRLF1_chr19_18588237_18611799	1/1	t0001	473	399	90	80	181	10	36	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	t0002	473	5	0	0	5	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	t0003	473	2	0	0	2	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	t0004	473	2	0	0	2	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF2_chrX_1185490_1217649	1/0	t0001	423	106	20	16	51	6	12	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0002	423	36	9	9	13	2	3	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0003	423	7	5	2	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/1	t0004	423	6	0	3	0	1	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0005	427	4	4	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0006	427	3	2	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0007	424	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0008	424	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0009	427	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0010	424	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	t0011	424	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF3_chr17_30777684_30829692	1/1	t0001	1545	174	39	44	61	7	21	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0002	1538	64	5	11	38	0	10	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0003	1545	40	14	7	14	2	3	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0004	1536	6	6	0	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0005	1545	5	5	0	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0006	1545	4	2	2	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0007	1545	4	0	1	0	3	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0008	1538	4	3	1	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0009	1538	4	3	1	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0010	1545	3	0	0	3	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0011	1545	3	0	2	0	0	1	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0012	1545	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0013	1538	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0014	1538	1	0	0	0	0	1	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0015	1538	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0016	1538	1	1	0	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0017	1545	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0018	1545	1	1	0	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0019	1545	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0020	1545	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0021	1545	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0022	1545	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0023	1545	1	1	0	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	t0024	1545	1	0	1	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLS1_chr20_6001123_6045053	0/0	t0001	3003	114	7	17	66	5	19	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	1/1	t0002	3020	53	1	6	39	1	4	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0003	3022	25	3	8	13	1	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0004	3015	18	1	11	0	0	6	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0005	3018	16	0	1	13	1	1	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0006	3004	13	4	1	4	0	4	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0007	3017	11	5	5	0	1	0	copy fasta	CRLS1	chr20	6001123	6045053