JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRLS1_chr20_6001123_6045053	0/0	t0008	3009	6	6	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0009	3011	6	6	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0010	3007	5	4	1	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0011	3003	5	5	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0012	3013	5	5	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0013	3007	4	4	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0014	3003	4	0	0	4	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0015	3002	4	0	1	0	3	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0016	3001	4	0	2	1	1	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0017	3007	4	4	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0018	3017	4	0	3	0	0	1	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0019	3003	4	0	1	3	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0020	3006	4	4	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0021	3006	3	2	1	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0022	3005	3	3	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0023	3016	3	0	1	1	0	1	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0024	3026	3	0	2	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0025	3015	2	0	0	2	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0026	3009	2	2	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0027	3007	2	2	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0028	3019	2	0	2	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0029	3012	2	0	0	1	0	1	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0030	3017	2	2	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0031	3011	2	2	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0032	3019	2	2	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0033	3020	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0034	3003	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0035	3003	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0036	2999	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0037	3005	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0038	2979	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0039	3019	1	0	0	0	0	1	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0040	3013	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0041	3015	1	0	1	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0042	3008	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0043	3010	1	0	0	0	0	1	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0044	3019	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0045	3021	1	0	0	0	0	1	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0046	3019	1	0	1	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0047	3021	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0048	3017	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0049	3020	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0050	3011	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0051	3005	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0052	3016	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0053	3018	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0054	3003	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0055	3020	1	0	0	0	1	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0056	3007	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0057	3009	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053