Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRG3_chr16_57663306_57694378	0/0	t0022	960	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG4_chrX_136295963_136421890	1/1	t0001	691	223	53	40	97	7	24	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	t0002	691	2	0	1	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	t0003	691	2	2	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	t0004	692	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	t0005	691	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG5_chr16_57537643_57582189	1/1	t0001	1749	97	16	28	36	5	10	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0002	1742	92	14	15	55	2	6	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0003	1749	48	0	2	42	1	3	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0004	1742	24	0	0	24	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0005	1749	23	23	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0006	1749	23	8	2	8	1	4	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0007	1749	22	3	4	8	1	6	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0008	1742	11	3	3	4	0	1	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0009	1742	8	0	2	3	1	2	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0010	1749	7	0	0	0	0	7	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0011	1749	6	6	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0012	1742	5	0	1	0	0	4	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0013	1742	5	5	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0014	1749	5	0	0	5	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0015	1749	3	1	2	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0016	1742	2	2	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0017	1742	2	2	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0018	1740	2	1	1	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0019	1749	2	2	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0020	1749	2	2	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0021	1749	2	0	0	2	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0022	1749	2	1	1	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0023	1749	2	0	1	0	0	1	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0024	1749	2	2	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0025	1742	1	0	0	0	1	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0026	1742	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0027	1742	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0028	1742	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0029	1749	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0030	1749	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0031	1749	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0032	1749	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	t0033	1747	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG6_chr6_142297007_142451261	1/1	t0001	3070	118	27	22	54	5	8	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0002	3070	51	9	14	17	5	6	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0003	3070	49	3	9	30	3	4	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0004	3070	6	5	1	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0005	3070	5	5	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0006	3070	4	4	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0007	3070	3	3	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0008	3069	3	0	0	3	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0009	3070	3	3	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0010	3070	3	3	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0011	3070	3	2	1	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261