JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRLS1_chr20_6001123_6045053	0/0	t0058	3011	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0059	3015	1	1	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0060	3020	1	0	1	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	t0061	3003	1	0	0	1	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRMP1_chr4_5815764_5898086	1/1	t0001	1114	204	44	44	79	17	18	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0002	1115	44	21	8	9	0	6	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0003	1117	42	20	7	12	0	3	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0004	1117	8	5	1	0	1	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0005	1114	4	0	0	1	0	3	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0006	1114	2	2	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0007	1115	2	0	0	2	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0008	1114	2	1	1	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0009	1114	1	0	0	1	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0010	1117	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0011	1114	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0012	1114	1	0	1	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0013	1114	1	0	0	0	0	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	t0014	1114	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRNKL1_chr20_20029368_20057466	1/1	t0001	1952	104	19	20	45	8	10	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0002	1952	89	5	12	67	0	5	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0003	1956	57	4	18	20	4	11	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0004	1952	27	23	3	0	0	1	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0005	1956	26	22	3	0	0	1	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0006	1952	24	0	0	24	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0007	1956	20	0	0	20	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0008	1956	19	1	2	12	1	3	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0009	1957	17	1	6	3	3	4	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0010	1952	7	0	0	4	0	3	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0011	1957	6	0	0	6	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0012	1952	4	3	1	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0013	1956	4	4	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0014	1956	4	0	0	4	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0015	1952	3	3	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0016	1952	2	2	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0017	1956	2	0	0	0	0	2	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0018	1956	2	0	0	0	0	2	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0019	1952	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0020	1952	1	0	0	0	0	1	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0021	1952	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0022	1952	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0023	1956	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0024	1952	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0025	1952	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0026	1952	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0027	1956	1	0	1	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0028	1957	1	0	0	0	0	1	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	t0029	1952	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNN_chr1_152404243_152419263	1/1	t0001	415	240	65	41	105	5	22	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	t0002	415	124	3	33	79	1	8	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	t0003	415	22	22	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263