JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRNN_chr1_152404243_152419263	0/0	t0004	415	3	3	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	t0005	415	2	2	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	t0006	415	1	1	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CROCC2_chr2_240901336_240998311	1/0	t0001	409	182	59	27	63	7	25	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/1	t0002	409	105	21	27	40	9	7	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	t0003	409	47	9	7	24	0	7	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	t0004	409	8	2	3	1	0	2	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	t0005	409	2	0	0	2	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	t0006	409	2	0	2	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	t0007	409	2	2	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	t0008	409	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	t0009	409	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC_chr1_16916931_16977964	0/1	t0001	607	107	12	39	40	6	9	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0002	607	56	16	9	21	3	7	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0003	608	15	3	3	5	0	4	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0004	607	13	10	3	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0005	608	13	1	2	8	0	2	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0006	607	6	5	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0007	609	4	4	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0008	607	4	0	0	4	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0009	607	3	0	0	3	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0010	607	2	2	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0011	607	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0012	607	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	1/0	t0013	607	1	0	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0014	607	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0015	608	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0016	609	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0017	607	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0018	607	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	t0019	607	1	0	0	0	1	0	copy fasta	CROCC	chr1	16916931	16977964
CROT_chr7_87340664_87404794	1/1	t0001	1367	233	66	40	99	10	16	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0002	1367	18	3	5	0	2	8	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0003	1376	16	15	1	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0004	1367	5	0	0	5	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0005	1367	3	0	0	3	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0006	1367	2	0	0	2	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0007	1367	2	2	0	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0008	1367	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0009	1367	1	1	0	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	t0010	1376	1	1	0	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CRPPA_chr7_16082525_16426538	0/0	t0001	4384	41	2	10	23	3	3	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0002	4418	26	4	0	21	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0003	4387	19	4	2	9	0	4	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0004	4395	16	2	3	6	1	4	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0005	4462	11	1	1	9	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0006	4385	10	2	2	5	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0007	4436	6	0	0	5	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0008	4381	6	6	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0009	4419	5	1	0	3	0	1	copy fasta	CRPPA	chr7	16082525	16426538