JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRPPA_chr7_16082525_16426538	0/0	t0010	4395	5	0	2	0	2	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0011	4443	4	4	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0012	4383	4	0	2	1	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0013	4395	4	0	0	4	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0014	4388	4	2	1	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0015	4388	4	1	0	3	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0016	4438	3	0	0	3	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0017	4443	3	3	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0018	4392	3	1	1	0	1	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0019	4386	3	3	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0020	4417	3	2	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0021	4396	3	0	2	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0022	4416	3	0	0	3	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0023	4499	3	0	0	3	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0024	4395	3	2	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0025	4340	3	3	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0026	4359	3	3	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0027	4489	2	0	0	2	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0028	4444	2	2	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0029	4417	2	2	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0030	4384	2	0	0	0	0	2	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0031	4356	2	0	2	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0032	4418	2	0	0	2	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/1	t0033	4419	2	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0034	4418	2	2	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0035	4420	2	0	0	2	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0036	4367	2	2	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0037	4368	2	2	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0038	4386	2	0	1	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0039	4386	2	0	0	2	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0040	4387	2	2	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0041	4386	2	1	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	1/0	t0042	4387	1	0	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0043	4393	1	0	0	0	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0044	4385	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0045	4396	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0046	4420	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0047	4394	1	0	0	0	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0048	4394	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0049	4418	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0050	4437	1	0	0	0	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0051	4435	1	0	0	0	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0052	4462	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0053	4462	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0054	4461	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0055	4488	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0056	4460	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0057	4442	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0058	4379	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0059	4383	1	0	0	0	0	1	copy fasta	CRPPA	chr7	16082525	16426538