JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRPPA_chr7_16082525_16426538	0/0	t0060	4471	1	0	0	0	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0061	4442	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0062	4416	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0063	4379	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0064	4394	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0065	4385	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0066	4417	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0067	4416	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0068	4415	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0069	4380	1	0	0	0	0	1	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0070	4420	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0071	4392	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0072	4380	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0073	4384	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0074	4394	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0075	4418	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0076	4393	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0077	4418	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0078	4446	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0079	4381	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0080	4357	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0081	4395	1	0	0	0	1	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0082	4394	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0083	4412	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0084	4426	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0085	4396	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0086	4366	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0087	4367	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0088	4399	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0089	4368	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0090	4387	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0091	4386	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0092	4387	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0093	4357	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0094	4439	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0095	4438	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0096	4389	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0097	4440	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0098	4385	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0099	4382	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0100	4388	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0101	4388	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0102	4391	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	t0103	4388	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRP_chr1_159707289_159719589	0/0	t0001	1341	194	15	35	124	5	15	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	1/1	t0002	1341	144	45	21	55	3	18	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0003	1341	44	2	19	12	6	5	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0004	1341	27	26	1	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0005	1341	8	0	2	6	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0006	1341	5	5	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589