JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRP_chr1_159707289_159719589	0/0	t0007	1293	2	0	0	2	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0008	1293	1	1	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0009	1341	1	0	1	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0010	1341	1	1	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0011	1341	1	1	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0012	1341	1	0	0	1	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0013	1341	1	1	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0014	1341	1	0	0	1	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0015	1341	1	0	1	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0016	1341	1	0	0	1	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	t0017	1341	1	1	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRTAC1_chr10_97860000_98035621	1/1	t0001	698	183	66	31	51	8	25	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0002	698	10	10	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0003	698	4	4	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0004	698	2	2	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0005	688	1	0	0	0	0	1	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0006	698	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0007	698	1	0	1	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0008	698	1	0	0	1	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	t0009	698	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAM_chr11_122833500_122877643	0/0	t0001	1292	116	35	16	56	1	8	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/1	t0002	1292	87	8	25	26	9	18	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0003	1292	69	1	4	59	0	5	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0004	1292	59	10	6	32	3	8	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	1/0	t0005	1292	26	7	2	13	2	1	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0006	1292	22	6	8	4	0	4	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0007	1292	10	10	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0008	1292	9	0	8	1	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0009	1292	9	8	1	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0010	1292	7	7	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0011	1292	4	4	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0012	1292	3	0	2	0	1	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0013	1292	2	0	0	1	0	1	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0014	1292	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0015	1292	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0016	1292	1	0	0	0	0	1	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0017	1292	1	0	0	0	0	1	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	t0018	1292	1	0	0	0	0	1	copy fasta	CRTAM	chr11	122833500	122877643
CRTAP_chr3_33109014_33152773	0/0	t0001	5390	84	4	10	58	0	12	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0002	5396	73	12	27	19	6	9	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0003	5390	64	3	11	38	1	11	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0004	5390	18	0	8	10	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0005	5389	17	10	1	6	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0006	5390	9	5	0	4	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0007	5390	8	8	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0008	5391	8	5	3	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0009	5390	8	0	0	7	1	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0010	5390	6	0	3	0	2	1	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0011	5390	5	0	0	5	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0012	5391	4	0	1	3	0	0	copy fasta	CRTAP	chr3	33109014	33152773