JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRTAP_chr3_33109014_33152773	0/0	t0063	5390	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0064	5390	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0065	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0066	5389	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0067	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0068	5389	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0069	5390	1	0	0	0	0	1	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0070	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0071	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0072	5389	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0073	5389	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0074	5389	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0075	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0076	5390	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0077	5389	1	0	1	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	1/0	t0078	5390	1	0	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0079	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0080	5407	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0081	5390	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0082	5391	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0083	5389	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0084	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0085	5390	1	0	0	0	1	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	t0086	5390	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTC1_chr19_18678680_18787333	1/1	t0001	4975	129	31	33	38	3	22	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0002	4975	42	9	15	14	1	3	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0003	4975	37	4	1	20	5	7	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0004	4974	13	11	2	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0005	4974	9	8	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0006	4975	6	6	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0007	4975	5	0	2	0	1	2	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0008	4975	4	4	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0009	4975	2	2	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0010	4974	2	0	0	2	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0011	4973	2	1	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0012	4975	2	0	1	0	1	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0013	4975	2	0	2	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0014	4975	1	0	0	0	1	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0015	4974	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0016	4975	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0017	4975	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0018	4975	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0019	4975	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0020	4975	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0021	4975	1	0	0	0	0	1	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0022	4974	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0023	4975	1	0	0	0	0	1	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0024	4975	1	0	0	0	0	1	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0025	4975	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0026	4975	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333