JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRTC1_chr19_18678680_18787333	0/0	t0027	4975	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0028	4975	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0029	4975	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0030	4975	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0031	4975	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	t0032	4975	1	0	0	0	0	1	copy fasta	CRTC1	chr19	18678680	18787333
CRTC2_chr1_153942675_153963612	1/1	t0001	550	262	65	44	109	11	31	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	t0002	550	107	10	26	59	1	11	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	t0003	550	1	1	0	0	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC3_chr15_90524923_90650345	1/1	t0001	3355	141	26	31	56	9	17	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0002	3355	40	1	13	22	2	2	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0003	3355	25	4	5	10	1	5	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0004	3355	6	1	4	0	1	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0005	3355	4	0	0	3	1	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0006	3669	4	4	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0007	3355	3	3	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0008	3355	3	0	0	3	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0009	3355	3	3	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0010	3355	3	3	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0011	3355	3	2	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0012	3355	2	1	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0013	3355	2	2	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0014	3355	2	2	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0015	3355	2	2	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0016	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0017	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0018	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0019	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0020	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0021	3671	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0022	3355	1	0	0	0	0	1	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0023	3355	1	0	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0024	3355	1	0	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0025	3355	1	0	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0026	3408	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0027	3355	1	0	0	0	0	1	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0028	3355	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0029	3297	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0030	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0031	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0032	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0033	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0034	3355	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0035	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0036	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0037	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0038	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0039	3355	1	0	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0040	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0041	3355	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345