JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRTC3_chr15_90524923_90650345	0/0	t0042	3326	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0043	3345	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0044	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0045	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0046	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0047	3355	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	t0048	3355	1	0	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRX_chr19_47816937_47848324	1/0	t0001	3467	107	12	23	53	6	12	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0002	3466	32	2	15	8	3	4	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0003	3468	12	9	3	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0004	3468	12	1	3	7	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0005	3468	11	0	3	0	1	7	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0006	3468	10	2	3	0	0	5	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0007	3466	9	0	1	5	2	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0008	3468	8	6	2	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0009	3467	8	7	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0010	3469	8	8	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/1	t0011	3467	6	0	3	1	1	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0012	3466	6	0	0	6	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0013	3472	5	5	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0014	3466	5	0	3	1	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0015	3468	5	0	0	5	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0016	3467	5	0	2	3	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0017	3468	5	0	1	0	3	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0018	3467	5	4	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0019	3469	5	1	3	0	1	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0020	3466	5	2	3	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0021	3467	4	0	1	3	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0022	3467	3	0	0	3	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0023	3468	3	3	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0024	3467	3	1	0	2	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0025	3464	3	3	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0026	3467	2	0	0	2	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0027	3468	2	2	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0028	3469	2	2	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0029	3468	2	0	0	0	0	2	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0030	3469	2	0	0	1	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0031	3469	2	0	0	0	0	2	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0032	3468	2	0	0	2	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0033	3466	2	2	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0034	3465	2	2	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0035	3468	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0036	3469	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0037	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0038	3466	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0039	3471	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0040	3468	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0041	3465	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0042	3470	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0043	3469	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324