JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRX_chr19_47816937_47848324	0/0	t0044	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0045	3467	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0046	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0047	3467	1	0	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0048	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0049	3467	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0050	3467	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0051	3468	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0052	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0053	3468	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0054	3469	1	0	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0055	3468	1	0	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0056	3468	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0057	3468	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0058	3479	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0059	3468	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0060	3468	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0061	3467	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0062	3467	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0063	3468	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0064	3466	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0065	3467	1	0	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0066	3463	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0067	3463	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0068	3466	1	0	0	0	1	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0069	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0070	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0071	3468	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0072	3467	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0073	3466	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0074	3467	1	0	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	t0075	3468	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRY1_chr12_106986364_107098549	0/0	t0001	1227	144	11	32	78	5	18	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0002	1227	75	20	11	35	0	9	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	1/1	t0003	1227	60	16	14	15	3	10	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0004	1227	16	14	2	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0005	1227	5	5	0	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0006	1227	4	4	0	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0007	1227	3	3	0	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0008	1227	3	2	0	1	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0009	1227	2	0	2	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0010	1227	2	0	0	2	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0011	1227	2	0	0	2	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0012	1227	1	0	0	0	0	1	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0013	1227	1	1	0	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0014	1227	1	0	0	1	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	t0015	1227	1	0	1	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY2_chr11_45842475_45888244	0/0	t0001	2350	92	12	26	39	6	9	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	1/0	t0002	2350	80	12	10	51	0	6	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0003	2352	48	19	10	14	2	3	copy fasta	CRY2	chr11	45842475	45888244