Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRG6_chr6_142297007_142451261	0/0	t0012	3070	3	3	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0013	3070	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0014	3070	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0015	3070	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0016	3070	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0017	3070	1	0	1	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0018	3070	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0019	3070	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0020	3070	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	t0021	3097	1	0	0	0	1	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG7_chr3_100604601_100700479	1/1	t0001	735	317	68	61	148	14	24	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0002	735	8	7	1	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0003	735	7	7	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0004	735	3	3	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0005	735	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0006	735	1	0	0	0	1	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0007	735	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0008	735	1	0	0	0	1	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	t0009	735	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRL1_chr19_14142743_14211169	0/1	t0001	3423	132	41	28	37	6	19	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0002	3425	36	1	20	9	2	4	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0003	3424	5	5	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0004	3423	5	4	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0005	3423	5	2	3	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0006	3424	4	4	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0007	3424	3	3	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0008	3423	3	0	0	3	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0009	3423	2	0	1	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0010	3424	2	1	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0011	3424	2	2	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0012	3423	2	0	0	0	0	2	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0013	3423	2	0	0	2	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0014	3423	2	2	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0015	3424	1	0	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0016	3425	1	0	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0017	3423	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0018	3425	1	0	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0019	3424	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0020	3424	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0021	3423	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0022	3423	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0023	3423	1	0	0	0	0	1	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0024	3423	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	1/0	t0025	3411	1	0	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0026	3423	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0027	3423	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0028	3423	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0029	3424	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0030	3423	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	t0031	3424	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169