JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRY2_chr11_45842475_45888244	0/1	t0004	2352	47	0	7	31	3	5	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0005	2352	12	12	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0006	2352	12	2	5	0	4	1	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0007	2350	11	11	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0008	2350	9	3	4	1	0	1	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0009	2350	8	0	0	1	0	7	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0010	2350	8	8	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0011	2350	6	0	0	2	1	3	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0012	2354	5	0	2	3	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0013	2352	5	3	2	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0014	2354	3	1	0	2	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0015	2350	2	0	0	0	0	2	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0016	2352	2	0	0	0	0	2	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0017	2350	2	2	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0018	2354	2	2	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0019	2352	2	2	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0020	2350	2	0	0	2	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0021	2350	1	1	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0022	2363	1	1	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0023	2350	1	1	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0024	2350	1	0	0	0	0	1	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0025	2350	1	0	0	0	0	1	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0026	2354	1	0	0	1	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0027	2350	1	1	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0028	2350	1	1	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0029	2350	1	0	0	0	0	1	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	t0030	2350	1	0	0	1	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRYAA_chr21_43164008_43177805	0/0	t0001	618	27	7	4	7	5	4	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	t0002	618	6	1	0	1	0	4	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	t0003	617	2	2	0	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	t0004	618	2	2	0	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	t0005	618	1	0	1	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	t0006	599	1	0	0	0	1	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	t0007	618	1	0	1	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAB_chr11_111903564_111916770	1/1	t0001	247	395	94	82	168	8	41	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	t0002	247	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	t0003	247	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	t0004	247	1	0	0	0	0	1	copy fasta	CRYAB	chr11	111903564	111916770
CRYBA1_chr17_29241859_29259494	1/1	t0001	151	371	80	73	161	12	43	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	t0002	152	22	7	3	7	2	3	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	t0003	151	1	1	0	0	0	0	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA2_chr2_218985190_218998422	1/1	t0001	309	387	91	74	170	6	44	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	t0002	309	1	1	0	0	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	t0003	309	1	1	0	0	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	t0004	309	1	1	0	0	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA4_chr22_26616963_26635669	1/1	t0001	219	401	94	78	183	14	30	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBA4_chr22_26616963_26635669	0/0	t0002	219	1	0	0	1	0	0	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBB1_chr22_26594278_26623027	1/1	t0001	283	422	85	78	201	14	42	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB1_chr22_26594278_26623027	0/0	t0002	283	3	3	0	0	0	0	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB1_chr22_26594278_26623027	0/0	t0003	283	1	0	0	1	0	0	copy fasta	CRYBB1	chr22	26594278	26623027