JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRYBB2_chr22_25214639_25236869	1/1	t0001	152	464	94	84	220	16	48	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB3_chr22_25194858_25212359	1/1	t0001	220	448	95	82	202	17	50	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	t0002	220	2	0	2	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	t0003	220	2	0	0	2	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	t0004	220	1	1	0	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	t0005	220	1	0	0	0	1	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBG1_chr6_106355717_106577017	1/1	t0001	3644	95	26	13	43	3	8	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0002	3644	43	16	8	9	2	8	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0003	3646	39	17	3	15	1	3	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0004	3644	28	8	7	9	2	2	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0005	3644	27	0	5	22	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0006	3644	12	1	7	0	0	4	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0007	3644	9	9	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0008	3646	6	6	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0009	3644	4	1	3	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0010	3644	2	2	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0011	3644	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0012	3646	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0013	3646	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0014	3644	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0015	3644	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0016	3644	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	t0017	3644	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG2_chr1_26316865_26359130	1/1	t0001	254	338	73	62	163	9	29	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	t0002	254	33	17	5	0	7	4	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	t0003	254	3	2	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	t0004	254	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	t0005	254	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG3_chr3_97817011_97949984	1/0	t0001	1867	172	55	36	53	8	19	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/1	t0002	1870	114	18	27	49	8	11	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0003	1870	7	3	1	3	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0004	1870	7	0	1	5	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0005	1867	4	4	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0006	1866	3	2	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0007	1867	3	3	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0008	1867	2	2	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0009	1870	2	0	0	0	0	2	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0010	1867	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	t0011	1867	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYGA_chr2_208155740_208168589	1/1	t0001	98	393	94	74	161	18	44	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	t0002	98	1	0	0	1	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGB_chr2_208137573_208151158	1/1	t0001	104	407	92	69	184	16	44	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	t0002	104	7	6	1	0	0	0	copy fasta	CRYGB	chr2	208137573	208151158
CRYGC_chr2_208123137_208134828	1/1	t0001	103	443	100	71	208	16	46	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	t0002	103	1	0	1	0	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGD_chr2_208116607_208129524	0/1	t0001	118	342	88	63	140	15	35	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	1/0	t0002	118	105	6	13	74	1	10	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	t0003	96	6	6	0	0	0	0	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	t0004	118	1	0	0	0	0	1	copy fasta	CRYGD	chr2	208116607	208129524
CRYGN_chr7_151423832_151445141	1/1	t0001	1441	278	33	51	153	8	31	copy fasta	CRYGN	chr7	151423832	151445141