JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRYGN_chr7_151423832_151445141	0/0	t0002	1441	60	13	13	30	2	2	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0003	1441	29	7	2	9	5	6	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0004	1441	26	16	2	3	0	5	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0005	1441	7	2	4	0	1	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0006	1441	7	7	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0007	1441	6	0	0	6	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0008	1441	6	5	1	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0009	1441	5	5	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0010	1441	5	5	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0011	1441	4	0	0	0	0	4	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0012	1441	3	0	0	3	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0013	1441	3	0	0	3	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0014	1441	3	3	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0015	1441	2	0	0	0	2	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0016	1441	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0017	1441	1	1	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0018	1441	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0019	1441	1	1	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0020	1441	1	1	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0021	1441	1	1	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0022	1441	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	t0023	1441	1	0	1	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGS_chr3_186533443_186549380	1/1	t0001	308	394	92	76	167	18	39	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	t0002	308	1	0	0	0	0	1	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	t0003	308	1	0	0	1	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYL1_chr13_20398669_20530857	0/0	t0001	524	156	54	32	51	6	13	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	1/1	t0002	524	89	35	11	32	2	7	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	t0003	524	3	0	0	1	0	2	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	t0004	524	1	0	1	0	0	0	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	t0005	524	1	1	0	0	0	0	copy fasta	CRYL1	chr13	20398669	20530857
CRYM_chr16_21253521_21283290	1/1	t0001	300	392	82	62	188	14	44	copy fasta	CRYM	chr16	21253521	21283290
CRYM_chr16_21253521_21283290	0/0	t0002	300	2	2	0	0	0	0	copy fasta	CRYM	chr16	21253521	21283290
CRYZL1_chr21_33584341_33646741	1/1	t0001	549	263	71	57	91	14	28	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	t0002	549	92	11	15	54	2	10	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	t0003	549	3	0	0	3	0	0	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	t0004	549	1	1	0	0	0	0	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	t0005	549	1	1	0	0	0	0	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZ_chr1_74700486_74738050	1/0	t0001	919	144	37	27	50	7	22	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0002	919	143	30	22	77	2	12	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/1	t0003	919	59	3	18	25	4	8	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0004	919	10	10	0	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0005	919	8	6	2	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0006	919	4	2	1	0	1	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0007	912	1	1	0	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0008	912	1	1	0	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0009	919	1	1	0	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	t0010	919	1	1	0	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CSAD_chr12_53152663_53185925	1/1	t0001	1133	216	43	37	100	5	29	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0002	1133	77	23	6	35	0	13	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	t0003	1133	13	13	0	0	0	0	copy fasta	CSAD	chr12	53152663	53185925