JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSDC2_chr22_41556010_41581666	0/0	t0019	2087	4	4	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0020	2064	3	0	2	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0021	2069	3	3	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0022	2071	3	3	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0023	2085	3	0	0	0	0	3	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0024	2077	3	3	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0025	2071	3	0	1	0	0	2	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0026	2067	2	2	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0027	2083	2	0	2	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0028	2083	2	2	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0029	2064	1	0	0	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0030	2066	1	0	0	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0031	2069	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0032	2068	1	0	0	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0033	2087	1	0	0	0	0	1	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0034	2085	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0035	2084	1	0	0	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0036	2081	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0037	2081	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0038	2077	1	0	0	0	1	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0039	2075	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0040	2071	1	0	1	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0041	2070	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0042	2069	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0043	2069	1	0	0	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0044	2070	1	0	0	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0045	2069	1	0	1	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0046	2093	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0047	2091	1	1	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	t0048	2080	1	0	1	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDE1_chr1_114711916_114762984	1/1	t0001	1701	237	69	44	87	8	27	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0002	1701	23	0	6	8	3	6	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0003	1701	17	0	5	12	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0004	1701	12	1	4	2	1	4	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0005	1702	7	0	1	6	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0006	1700	7	7	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0007	1697	4	4	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0008	1697	4	4	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0009	1700	4	0	0	3	0	1	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0010	1701	2	2	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0011	1701	1	0	1	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0012	1701	1	0	0	0	0	1	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0013	1701	1	0	0	1	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0014	1701	1	0	1	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0015	1701	1	0	0	0	0	1	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0016	1701	1	0	1	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0017	1701	1	1	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0018	1701	1	0	0	1	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0019	1701	1	1	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	t0020	1701	1	1	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984