JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSDE1_chr1_114711916_114762984	0/0	t0021	1701	1	0	1	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSE1L_chr20_49041312_49101949	1/1	t0001	635	274	57	45	139	4	27	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	t0002	635	104	25	21	39	4	15	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	t0003	635	2	2	0	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	t0004	635	2	0	2	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	t0005	635	1	0	1	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	t0006	635	1	1	0	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	t0007	635	1	0	1	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	t0008	635	1	1	0	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSF1R_chr5_150048295_150091554	0/1	t0001	903	143	24	30	62	7	19	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	1/0	t0002	902	74	0	18	39	4	12	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0003	902	46	13	15	16	0	2	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0004	902	34	10	0	20	0	4	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0005	902	20	19	0	0	0	1	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0006	902	18	8	5	1	4	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0007	902	11	0	0	11	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0008	902	11	1	0	10	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0009	901	10	9	1	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0010	902	9	0	0	9	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0011	903	4	0	1	1	1	1	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0012	902	3	3	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0013	902	3	3	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0014	903	3	3	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0015	903	3	1	0	2	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0016	903	3	0	0	3	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0017	902	2	2	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0018	903	2	0	0	2	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0019	903	1	0	0	0	0	1	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0020	901	1	0	0	0	0	1	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0021	903	1	0	0	1	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0022	902	1	0	0	0	0	1	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0023	903	1	0	0	1	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0024	903	1	0	0	1	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	t0025	903	1	0	0	1	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1_chr1_109905849_109935992	0/1	t0001	2330	189	37	42	74	2	33	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0002	2330	176	30	15	120	4	7	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0003	2330	26	3	15	0	3	5	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0004	2330	9	9	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0005	2330	7	0	0	7	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0006	2330	6	6	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0007	2330	4	4	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0008	2330	2	2	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	1/0	t0009	2330	2	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0010	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0011	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0012	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0013	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0014	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0015	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0016	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992