JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSF1_chr1_109905849_109935992	0/0	t0017	2330	1	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0018	2330	1	0	0	0	0	1	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0019	2330	1	0	0	0	1	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0020	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0021	2330	1	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	t0022	2330	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF2RA_chrX_1263814_1314935	0/0	t0001	613	35	6	12	16	0	1	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/1	t0002	613	35	16	4	7	0	7	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	1/0	t0003	613	31	3	12	7	1	7	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0004	613	28	2	5	18	0	3	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0005	613	16	15	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0006	613	2	1	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0007	613	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0008	613	2	0	2	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0009	613	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0010	615	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0011	613	1	1	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0012	613	1	0	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0013	613	1	1	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0014	613	1	0	0	0	0	1	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	t0015	613	1	0	0	0	0	1	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RB_chr22_36908628_36945439	1/1	t0001	2160	164	12	47	75	7	21	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0002	2160	69	44	9	3	4	9	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0003	2160	22	5	7	8	0	2	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0004	2160	21	0	2	9	3	7	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0005	2160	12	12	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0006	2160	10	0	2	1	1	6	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0007	2160	9	1	0	8	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0008	2160	7	6	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0009	2160	6	2	3	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0010	2160	5	0	0	5	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0011	2160	4	3	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0012	2160	3	3	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0013	2160	2	0	1	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0014	2160	2	0	0	1	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0015	2160	2	0	0	2	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0016	2160	2	0	1	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0017	2160	1	0	0	0	1	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0018	2160	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0019	2160	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0020	2160	1	0	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0021	2160	1	0	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0022	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0023	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0024	2160	1	0	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0025	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0026	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0027	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0028	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0029	2160	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439