JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSF2RB_chr22_36908628_36945439	0/0	t0030	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0031	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0032	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0033	2160	1	0	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0034	2160	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0035	2160	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	t0036	2160	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2_chr5_132068789_132081170	1/1	t0001	354	450	97	79	210	16	46	copy fasta	CSF2	chr5	132068789	132081170
CSF2_chr5_132068789_132081170	0/0	t0002	354	1	1	0	0	0	0	copy fasta	CSF2	chr5	132068789	132081170
CSF2_chr5_132068789_132081170	0/0	t0003	354	1	0	1	0	0	0	copy fasta	CSF2	chr5	132068789	132081170
CSF3R_chr1_36461043_36487913	1/1	t0001	498	418	99	64	195	18	40	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	t0002	498	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	t0003	498	1	0	0	1	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3_chr17_40010440_40022813	0/1	t0001	890	165	25	33	84	7	15	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0002	890	139	9	28	77	5	20	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	1/0	t0003	890	64	8	3	45	0	7	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0004	890	44	33	4	0	3	4	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0005	890	7	6	1	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0006	875	4	4	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0007	890	4	4	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0008	890	3	3	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0009	890	2	0	1	0	1	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0010	890	1	1	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	t0011	890	1	1	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSGALNACT1_chr8_19399161_19762277	0/0	t0001	2107	53	1	13	31	2	6	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0002	2105	30	1	11	10	2	6	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0003	2105	20	2	4	8	2	4	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/1	t0004	2105	17	10	2	1	1	2	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0005	2103	17	17	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0006	2103	11	6	1	0	3	1	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	1/0	t0007	2103	9	5	1	1	1	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0008	2107	7	1	3	3	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0009	2105	6	4	0	0	2	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0010	2107	5	0	1	4	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0011	2105	5	4	0	0	0	1	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0012	2107	5	1	0	3	0	1	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0013	2107	4	0	0	0	0	4	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0014	2105	3	1	2	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0015	2105	3	0	1	0	0	2	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0016	2103	3	3	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0017	2107	2	1	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0018	2103	2	0	0	2	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0019	2103	2	2	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0020	2107	2	2	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0021	2103	2	1	0	0	0	1	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0022	2105	2	0	1	0	1	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0023	2105	2	2	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0024	2107	2	0	2	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0025	2103	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	t0026	2139	1	0	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277