JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSH2_chr17_63867016_63878677	0/0	t0002	174	181	19	28	108	5	21	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	t0003	174	14	13	1	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	t0004	174	3	3	0	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	t0005	174	1	0	1	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSHL1_chr17_63904608_63916258	1/1	t0001	166	273	66	48	119	11	27	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0002	166	151	27	21	83	6	14	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0003	166	4	0	2	0	1	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0004	166	2	1	1	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0005	166	1	0	0	1	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0006	166	1	0	0	0	0	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0007	166	1	0	1	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0008	166	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0009	166	1	0	0	0	0	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0010	166	1	0	1	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0011	166	1	0	0	1	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	t0012	166	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSKMT_chr11_62660312_62673108	1/1	t0001	1312	310	66	72	120	12	38	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0002	1312	17	0	0	17	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0003	1312	10	8	2	0	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0004	1312	6	6	0	0	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0005	1312	5	4	1	0	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0006	1312	4	1	2	0	1	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0007	1312	2	2	0	0	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0008	1312	2	0	0	0	0	2	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0009	1312	2	0	0	2	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0010	1312	1	0	0	0	1	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0011	1312	1	0	1	0	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0012	1312	1	0	0	1	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	t0013	1312	1	1	0	0	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSK_chr15_74777080_74808197	0/1	t0001	1391	196	27	29	104	9	26	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0002	1391	105	10	17	70	0	8	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	1/0	t0003	1391	50	27	8	3	4	7	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0004	1391	16	15	1	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0005	1391	14	0	1	11	1	1	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0006	1391	3	3	0	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0007	1391	2	2	0	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0008	1391	2	0	2	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0009	1390	1	0	0	1	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0010	1391	1	0	0	1	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0011	1391	1	0	0	1	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0012	1391	1	1	0	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0013	1391	1	0	0	1	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	t0014	1391	1	1	0	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSMD1_chr8_2930361_4999914	0/0	t0001	3721	11	1	0	9	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0002	3720	10	0	1	6	0	3	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0003	3722	5	5	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0004	3731	3	3	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0005	3720	3	1	0	1	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0006	3721	3	3	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0007	3722	3	0	1	0	1	1	copy fasta	CSMD1	chr8	2930361	4999914