Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRL2_chr1_81795934_81998932	0/0	t0001	3008	17	0	4	11	0	2	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0002	3008	14	0	2	9	0	3	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0003	3023	12	1	3	4	1	3	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/1	t0004	3009	12	1	3	6	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0005	3023	9	5	0	4	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0006	3015	7	1	1	5	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0007	3016	6	6	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0008	3013	6	0	0	6	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0009	3016	5	0	0	4	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0010	3027	5	3	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0011	3009	5	0	1	4	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0012	3009	4	1	2	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0013	3011	4	1	1	2	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0014	3009	4	0	1	3	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0015	3007	4	0	4	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0016	3023	3	0	0	3	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0017	3037	3	0	1	0	0	2	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0018	3022	3	0	1	0	2	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0019	3023	3	0	2	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0020	3014	3	3	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0021	3040	3	2	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0022	3017	3	0	3	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0023	3037	3	0	2	0	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0024	3029	3	1	0	2	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0025	3008	3	0	0	3	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0026	3010	3	0	0	2	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0027	3016	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0028	3039	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0029	3035	2	0	1	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0030	3027	2	2	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0031	3023	2	0	0	0	1	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0032	3009	2	0	1	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0033	3008	2	0	0	2	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0034	3013	2	0	0	0	0	2	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0035	3023	2	1	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0036	3010	2	0	0	0	0	2	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0037	3008	2	0	0	2	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0038	3009	2	0	0	1	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0039	3010	2	0	0	1	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0040	3013	2	1	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0041	3025	2	2	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0042	3035	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0043	3040	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0044	3041	2	1	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0045	3036	2	0	1	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0046	3038	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0047	3033	2	2	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0048	3023	2	0	0	2	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0049	3009	2	0	0	0	1	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0050	3011	2	0	0	2	0	0	copy fasta	ADGRL2	chr1	81795934	81998932