JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSMD1_chr8_2930361_4999914	0/0	t0008	3727	2	1	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0009	3731	2	1	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0010	3726	2	1	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0011	3722	2	2	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0012	3722	2	2	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0013	3723	2	0	0	2	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0014	3723	2	0	2	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0015	3722	2	1	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0016	3721	2	2	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0017	3732	2	0	0	0	0	2	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0018	3730	2	1	0	0	1	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0019	3722	2	0	1	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0020	3721	2	2	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0021	3723	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0022	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0023	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0024	3727	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0025	3729	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0026	3723	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0027	3727	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0028	3731	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0029	3724	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0030	3726	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0031	3723	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0032	3721	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0033	3719	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0034	3719	1	0	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0035	3720	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0036	3723	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0037	3726	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0038	3724	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0039	3724	1	0	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0040	3719	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0041	3728	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0042	3723	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0043	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0044	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0045	3724	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0046	3719	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0047	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0048	3722	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0049	3730	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0050	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0051	3726	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0052	3730	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0053	3730	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0054	3722	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0055	3725	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0056	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0057	3725	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914