JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSMD1_chr8_2930361_4999914	0/0	t0058	3722	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0059	3720	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0060	3720	1	0	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0061	3724	1	0	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0062	3723	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0063	3720	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0064	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0065	3721	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0066	3726	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0067	3724	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0068	3722	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0069	3720	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0070	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0071	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0072	3723	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0073	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0074	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0075	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0076	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0077	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0078	3721	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0079	3720	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0080	3726	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0081	3722	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	t0082	3721	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD2_chr1_33508998_34170230	0/1	t0001	2765	16	8	2	3	1	1	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	1/0	t0002	2760	11	5	3	0	1	1	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0003	2762	11	7	4	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0004	2761	6	6	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0005	2767	5	0	3	2	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0006	2763	3	3	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0007	2767	3	3	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0008	2761	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0009	2760	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0010	2762	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0011	2761	1	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0012	2762	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0013	2763	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0014	2767	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0015	2766	1	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0016	2765	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0017	2760	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	t0018	2761	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD3_chr8_112217928_113441939	1/1	t0001	1929	37	13	8	7	0	7	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	t0002	1928	11	3	6	2	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	t0003	1928	10	7	1	2	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	t0004	1928	10	8	0	1	0	1	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	t0005	1928	5	5	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	t0006	1928	3	3	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	t0007	1928	2	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939