JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSMD3_chr8_112217928_113441939	0/0	t0008	1928	1	0	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	t0009	1929	1	0	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSN1S1_chr4_69926068_69951574	1/1	t0001	441	294	71	42	143	11	25	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	t0002	440	143	14	33	71	7	18	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	t0003	441	6	6	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	t0004	441	2	1	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	t0005	440	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	t0006	441	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	t0007	440	1	0	0	0	0	1	copy fasta	CSN1S1	chr4	69926068	69951574
CSN2_chr4_69950256_69970728	1/1	t0001	434	380	88	61	179	15	35	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0002	434	57	1	12	39	1	4	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0003	434	3	3	0	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0004	434	2	1	1	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0005	434	2	0	0	2	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0006	434	1	0	0	0	0	1	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0007	434	1	0	1	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0008	434	1	0	1	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	t0009	434	1	1	0	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN3_chr4_70237597_70256432	1/0	t0001	283	361	92	67	154	12	35	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/1	t0002	283	102	2	8	78	4	9	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	t0003	283	1	0	1	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSNK1A1L_chr13_37098259_37110664	0/0	t0001	1393	190	16	32	110	9	23	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	1/1	t0002	1393	128	27	30	45	5	19	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0003	1393	26	0	6	16	3	1	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0004	1393	26	23	2	0	1	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0005	1390	12	11	1	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0006	1393	5	5	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0007	1393	4	4	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0008	1393	3	0	0	3	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0009	1393	3	3	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0010	1393	2	0	0	2	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0011	1393	1	0	0	0	0	1	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0012	1393	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0013	1393	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0014	1393	1	0	1	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	t0015	1393	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1_chr5_149487982_149556439	0/1	t0001	4345	83	14	13	45	1	9	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0002	4346	43	11	3	28	0	1	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0003	4347	42	17	9	11	3	2	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	1/0	t0004	4347	32	3	14	0	4	10	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0005	4345	29	2	1	24	0	2	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0006	4345	23	0	0	23	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0007	4346	21	0	0	21	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0008	4347	12	9	3	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0009	4347	9	7	2	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0010	4347	7	0	4	0	1	2	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0011	4346	7	0	4	3	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0012	4346	6	1	2	0	1	2	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0013	4348	5	4	1	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0014	4346	5	3	1	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439