JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK1A1_chr5_149487982_149556439	0/0	t0015	4344	4	4	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0016	4344	4	4	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0017	4344	3	0	0	3	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0018	4346	3	1	1	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0019	4344	3	1	0	2	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0020	4344	3	0	0	3	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0021	4345	3	0	0	3	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0022	4345	3	0	0	3	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0023	4344	2	0	0	2	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0024	4348	2	2	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0025	4347	2	2	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0026	4346	2	0	0	0	1	1	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0027	4348	2	0	0	1	1	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0028	4345	2	0	2	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0029	4345	2	1	1	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0030	4345	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0031	4345	1	0	0	0	0	1	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0032	4345	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0033	4347	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0034	4344	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0035	4344	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0036	4345	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0037	4345	1	0	1	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0038	4346	1	0	1	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0039	4345	1	0	0	0	0	1	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0040	4345	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0041	4345	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0042	4345	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0043	4346	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0044	4346	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0045	4348	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0046	4347	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0047	4346	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0048	4346	1	0	1	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0049	4346	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0050	4347	1	0	0	0	0	1	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0051	4347	1	0	1	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0052	4346	1	0	1	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0053	4347	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0054	4345	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	t0055	4346	1	1	0	0	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1D_chr17_82237667_82278700	1/0	t0001	2434	243	44	59	90	14	35	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0002	2434	21	18	3	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0003	2434	8	6	2	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0004	2434	6	5	1	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0005	2434	6	6	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0006	2430	6	0	0	3	0	3	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/1	t0007	2434	4	0	0	0	2	1	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0008	2434	3	3	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0009	2434	3	3	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700