JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK1D_chr17_82237667_82278700	0/0	t0010	2433	2	0	0	1	0	1	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0011	2434	2	2	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0012	2434	2	2	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0013	2434	1	0	0	1	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0014	2434	1	0	0	1	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0015	2434	1	0	0	1	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0016	2434	1	0	0	0	0	1	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0017	2434	1	0	0	0	0	1	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0018	2434	1	0	0	1	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0019	2434	1	1	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0020	2434	1	0	1	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0021	2434	1	1	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0022	2433	1	0	0	1	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0023	2434	1	1	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0024	2434	1	0	0	1	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0025	2434	1	1	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	t0026	2434	1	1	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1E_chr22_38285691_38322433	0/0	t0001	1563	63	0	9	46	3	5	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/1	t0002	1566	38	2	9	18	2	6	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0003	1564	27	19	2	4	1	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0004	1566	27	2	11	3	1	10	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0005	1573	22	1	4	14	1	2	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0006	1567	18	9	7	1	1	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0007	1570	15	0	0	12	1	2	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0008	1563	10	9	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0009	1564	9	1	2	1	0	5	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0010	1570	8	1	0	7	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0011	1571	8	5	0	3	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0012	1574	8	0	1	7	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0013	1566	6	6	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0014	1562	6	0	1	4	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0015	1570	4	0	1	3	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0016	1565	4	4	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0017	1563	4	0	0	4	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0018	1563	4	0	0	4	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0019	1567	4	0	0	4	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	1/0	t0020	1567	4	0	0	3	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0021	1572	4	0	1	3	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0022	1568	4	3	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0023	1577	4	0	1	3	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0024	1570	4	2	1	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0025	1566	3	0	0	3	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0026	1563	3	0	3	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0027	1568	3	2	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0028	1569	3	3	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0029	1566	3	0	0	3	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0030	1585	3	0	3	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0031	1587	2	0	0	2	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0032	1569	2	0	0	0	2	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0033	1563	2	2	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433