JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK1E_chr22_38285691_38322433	0/0	t0034	1572	2	0	0	2	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0035	1569	2	2	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0036	1565	2	0	0	0	0	2	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0037	1568	2	1	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0038	1573	2	2	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0039	1570	2	0	0	2	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0040	1581	2	0	0	0	2	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0041	1578	2	0	1	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0042	1568	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0043	1573	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0044	1568	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0045	1569	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0046	1564	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0047	1568	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0048	1563	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0049	1566	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0050	1566	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0051	1569	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0052	1569	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0053	1564	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0054	1565	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0055	1562	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0056	1566	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0057	1568	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0058	1566	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0059	1561	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0060	1565	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0061	1563	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0062	1563	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0063	1562	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0064	1562	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0065	1566	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0066	1569	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0067	1566	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0068	1566	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0069	1567	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0070	1566	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0071	1566	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0072	1570	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0073	1569	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0074	1570	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0075	1568	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0076	1568	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0077	1571	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0078	1565	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0079	1567	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0080	1566	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0081	1566	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0082	1567	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0083	1565	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433