JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK1E_chr22_38285691_38322433	0/0	t0084	1565	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0085	1566	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0086	1572	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0087	1570	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0088	1568	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0089	1576	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0090	1575	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0091	1574	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0092	1581	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0093	1606	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0094	1616	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0095	1779	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0096	1572	1	0	0	0	0	1	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0097	1573	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0098	1576	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0099	1575	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0100	1575	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0101	1568	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0102	1571	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0103	1575	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0104	1572	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0105	1574	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0106	1583	1	1	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0107	1588	1	0	1	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	t0108	1582	1	0	0	1	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1G1_chr15_64160525_64361173	1/1	t0001	6817	80	24	12	26	4	12	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0002	6817	13	10	3	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0003	6816	11	9	2	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0004	6815	8	0	0	7	0	1	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0005	6816	8	8	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0006	6817	8	1	0	1	0	6	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0007	6816	5	0	2	0	1	2	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0008	6816	5	5	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0009	6816	4	4	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0010	6816	3	2	1	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0011	6816	3	1	0	2	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0012	6816	2	2	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0013	6816	2	2	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0014	6817	2	0	2	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0015	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0016	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0017	6817	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0018	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0019	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0020	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0021	6817	1	0	0	1	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0022	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0023	6817	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0024	6817	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0025	6817	1	0	0	0	0	1	copy fasta	CSNK1G1	chr15	64160525	64361173