JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK1G1_chr15_64160525_64361173	0/0	t0026	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0027	6817	1	0	0	1	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0028	6817	1	0	0	1	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0029	6815	1	0	0	0	1	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0030	6815	1	0	0	1	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0031	6817	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0032	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0033	6817	1	0	0	0	0	1	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0034	6817	1	0	0	0	0	1	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0035	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	t0036	6816	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G2_chr19_1936172_1986338	0/1	t0001	1649	268	38	53	127	13	36	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0002	1649	61	40	2	11	3	5	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0003	1649	16	2	7	7	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0004	1649	5	0	0	5	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0005	1647	5	5	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0006	1649	2	0	2	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0007	1649	2	0	0	2	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0008	1649	2	1	1	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0009	1649	2	2	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0010	1637	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	1/0	t0011	1648	1	0	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0012	1647	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0013	1649	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0014	1649	1	0	1	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0015	1649	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0016	1649	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0017	1619	1	0	1	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0018	1649	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0019	1649	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0020	1649	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0021	1649	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0022	1649	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0023	1649	1	0	1	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0024	1649	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0025	1649	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0026	1649	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0027	1649	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	t0028	1659	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G3_chr5_123507177_123622049	0/0	t0001	3298	85	11	16	44	3	11	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0002	3295	54	23	14	13	2	2	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	1/1	t0003	3295	52	21	11	13	4	1	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0004	3295	31	0	4	25	0	2	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0005	3295	29	7	8	10	2	2	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0006	3293	7	7	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0007	3298	5	0	5	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0008	3295	4	3	0	0	1	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0009	3294	4	4	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0010	3291	3	3	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0011	3291	2	2	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049