JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK1G3_chr5_123507177_123622049	0/0	t0012	3295	2	2	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0013	3295	2	2	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0014	3295	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0015	3291	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0016	3295	1	0	0	1	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0017	3295	1	0	1	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0018	3298	1	0	0	1	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0019	3298	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0020	3295	1	0	1	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0021	3295	1	0	1	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0022	3294	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0023	3295	1	0	1	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0024	3295	1	0	0	1	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0025	3293	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0026	3295	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	t0027	3293	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK2A1_chr20_467498_548790	0/0	t0001	11811	36	4	2	23	1	6	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0002	11811	35	4	3	28	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0003	11809	28	1	6	17	1	3	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	1/0	t0004	11809	28	13	9	1	3	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0005	11809	19	0	2	11	2	4	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0006	11812	13	0	6	7	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0007	11806	10	9	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0008	11808	8	3	4	0	0	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0009	11809	5	4	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0010	11810	5	0	2	0	0	3	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0011	11809	4	0	0	4	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0012	11809	4	1	3	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0013	11809	4	0	2	0	1	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0014	11809	4	4	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0015	11782	4	4	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0016	11811	3	3	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0017	11809	3	0	0	0	1	2	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0018	11811	3	0	0	0	2	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0019	11774	3	3	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0020	11811	2	0	0	2	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0021	11809	2	0	0	2	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0022	11808	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0023	11809	2	0	2	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0024	11809	2	0	2	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0025	11811	2	1	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0026	11811	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0027	11812	2	0	0	0	0	2	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0028	11811	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0029	11811	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0030	11812	2	0	0	0	0	2	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0031	11810	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0032	11811	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0033	11809	2	0	0	0	0	2	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0034	11782	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790