JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK2A1_chr20_467498_548790	0/0	t0035	11811	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0036	11777	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0037	11777	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0038	11808	2	0	0	2	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0039	11808	2	0	0	2	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0040	11809	2	0	2	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0041	11810	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0042	11811	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0043	11809	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0044	11811	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0045	11809	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0046	11809	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0047	11809	1	0	0	0	1	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0048	11812	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0049	11811	1	0	0	0	0	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0050	11812	1	0	0	0	0	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0051	11809	1	0	0	0	1	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0052	11809	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0053	11809	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0054	11809	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0055	11810	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0056	11811	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0057	11809	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0058	11809	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0059	11812	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0060	11811	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0061	11811	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0062	11812	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0063	11812	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0064	11812	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0065	11811	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0066	11811	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0067	11806	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0068	11809	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0069	11811	1	0	0	0	0	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0070	11809	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0071	11809	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0072	11811	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0073	11812	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/1	t0074	11812	1	0	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0075	11812	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0076	11813	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0077	11811	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0078	11812	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0079	11812	1	0	0	0	0	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0080	11811	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0081	11810	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0082	11810	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0083	11811	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0084	11809	1	0	0	0	1	0	copy fasta	CSNK2A1	chr20	467498	548790