JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSNK2A1_chr20_467498_548790	0/0	t0085	11811	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0086	11810	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0087	11808	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0088	11809	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0089	11777	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0090	11808	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0091	11808	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0092	11807	1	0	0	0	0	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0093	11776	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0094	11808	1	0	0	0	0	1	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	t0095	11809	1	0	1	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A2_chr16_58152907_58203106	0/1	t0001	835	349	81	56	161	15	35	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	t0002	835	40	5	2	23	1	9	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	1/0	t0003	835	4	0	2	1	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	t0004	835	2	2	0	0	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	t0005	835	2	2	0	0	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	t0006	835	1	0	1	0	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	t0007	835	1	0	1	0	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	t0008	835	1	0	0	1	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A3_chr11_11346942_11358250	1/1	t0001	134	452	94	78	212	16	50	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2B_chr6_31661080_31675067	0/0	t0001	282	180	54	32	76	5	13	copy fasta	CSNK2B	chr6	31661080	31675067
CSNK2B_chr6_31661080_31675067	0/1	t0002	282	125	1	23	76	7	17	copy fasta	CSNK2B	chr6	31661080	31675067
CSNK2B_chr6_31661080_31675067	0/0	t0003	282	110	33	23	33	6	15	copy fasta	CSNK2B	chr6	31661080	31675067
CSNK2B_chr6_31661080_31675067	0/0	t0004	282	4	0	0	1	0	3	copy fasta	CSNK2B	chr6	31661080	31675067
CSNK2B_chr6_31661080_31675067	0/0	t0005	282	1	1	0	0	0	0	copy fasta	CSNK2B	chr6	31661080	31675067
CSNK2B_chr6_31661080_31675067	0/0	t0006	282	1	1	0	0	0	0	copy fasta	CSNK2B	chr6	31661080	31675067
CSNKA2IP_chr3_88333456_88472594	1/0	t0001	491	250	62	47	117	7	16	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/1	t0002	491	135	19	21	67	5	22	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	t0003	491	1	1	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSPG4_chr15_75669322_75717848	1/0	t0001	1322	150	28	34	69	5	13	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0002	1322	84	12	28	29	6	9	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0003	1322	70	25	5	27	4	9	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0004	1322	28	7	1	20	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0005	1322	21	5	9	0	0	7	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0006	1322	6	0	0	6	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0007	1322	4	4	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/1	t0008	1322	3	0	1	0	1	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0009	1322	3	3	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0010	1322	3	0	0	3	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0011	1322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	t0012	1322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG5_chr3_47557238_47583865	0/0	t0001	536	208	34	42	96	14	22	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	1/1	t0002	535	142	47	30	42	2	19	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	t0003	536	5	0	0	5	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	t0004	536	2	0	0	2	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	t0005	536	1	0	1	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	t0006	523	1	1	0	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	t0007	536	1	0	1	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	t0008	536	1	0	0	1	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	t0009	536	1	0	0	0	0	1	copy fasta	CSPG5	chr3	47557238	47583865