JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CSPP1_chr8_67059392_67201614	1/1	t0001	1179	113	30	22	31	4	24	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	t0002	1175	32	20	7	1	0	4	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	t0003	1175	7	7	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	t0004	1181	3	3	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	t0005	1179	1	1	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	t0006	1175	1	1	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	t0007	1179	1	0	1	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSRNP1_chr3_39136855_39158591	0/1	t0001	1395	205	28	51	85	11	29	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	1/0	t0002	1395	63	11	8	33	4	6	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0003	1395	55	27	4	19	0	5	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0004	1395	49	15	16	15	1	2	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0005	1395	42	12	1	28	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0006	1395	2	0	0	0	0	2	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0007	1395	2	2	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0008	1395	2	0	0	0	2	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0009	1395	1	0	0	1	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0010	1395	1	0	0	1	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0011	1395	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0012	1395	1	0	0	0	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0013	1395	1	0	1	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0014	1395	1	0	1	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0015	1395	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0016	1395	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0017	1395	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	t0018	1395	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP2_chr12_51056205_51088596	0/1	t0001	2886	179	15	25	121	3	14	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	1/0	t0002	2886	177	40	47	62	9	18	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0003	2886	13	12	1	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0004	2886	8	0	0	1	1	6	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0005	2886	5	5	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0006	2886	4	4	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0007	2886	3	3	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0008	2886	3	3	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0009	2886	2	2	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0010	2886	2	2	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0011	2886	2	0	0	0	0	2	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0012	2886	2	0	1	0	1	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0013	2886	2	2	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0014	2886	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0015	2886	1	0	1	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0016	2886	1	0	1	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0017	2886	1	0	1	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0018	2886	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0019	2886	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0020	2886	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0021	2886	1	0	0	0	0	1	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0022	2886	1	0	1	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0023	2886	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0024	2886	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	t0025	2886	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596